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[separator] Overview Courses
Below are interactive courses to help you understand how the nCounter® SPRINT system works.
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nCounter® 101: Introduction to the Technology
This course will introduce you to the nCounter® Analysis System to provide you with a basic understanding of the technology.
21 min
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Instrument Operation
Introductory
Course
nCounter Analysis System
Sample Prep
How to Run Samples on the nCounter® SPRINT Profiler
This learning path will show you the steps for prepping your CodeSet and processing your samples on the nCounter® SPRINT Profiler. Let's dive in!
9 Courses
How to Perform the miRNA Expression Assay
Check out this course to see the miRNA assay workflow from start to finish!
35 min
Course
Sample Prep
[separator] Resources
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Loading Samples Into The nCounter® SPRINT Cartridge
This short course will show you how to load your samples into a nCounter® SPRINT cartridge.
9 min
nCounter® SPRINT Profiler
Basic user
How-To Video
Sample Prep
nCounter® SPRINT Maintenance: Changing Buffers
Watch this video to learn how to change buffers on the nCounter® SPRINT.
13 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter® SPRINT.
7 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
Troubleshoot
How-To Video
Quick Guide: nCounter Pro System
MK4530 | Mar 2022
nCounter® Pro/MAX/FLEX
Instrument Operation
Quick Reference Guide
Multiplex, Spatially Resolved Protein Analysis with GeoMx DSP and Abcam Recombinant Monoclonal Antibodies
MK1435 | Mar 2019
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Document
Sample Prep
nCounter MAX/FLEX Dry Run Protocol
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Instrument Operation
Document
GeoMx DSP Hibernating Procedure for Extended Shutdown
MAN-10155-04 | Aug 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Guideline
GeoMx DSP TCR Profiling Plug-in Instructions
PMR-11555 | Jun 2023
GeoMx® Digital Spatial Profiler
Data Analysis
Manuals & Instructions
The Development and Performance of a GeoMx® Based Proteogenomic Workflow for the Detection of Both RNA and Protein on a Single FFPE Slide
MK4240 | Jan 2022
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Spatial Proteogenomics
nCounter Neuropathology Application Note
MK0553
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
MicroRNA Biomarker Discovery and Validation
MK1187
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
miRNA
Materials List: GeoMx RNA (Manual) with nCounter Readout
MAN-10113-09 | Nov 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
nCounter SPRINT Profiler Site Requirements Checklist
FRM-10155-02 | Aug 2022
nCounter® SPRINT Profiler
Site Readiness
Checklist
GeoMx NGS Pipeline Software User Manual
MAN-10118-03 | This document has been replaced by the GeoMx NGS Readout User Manual (MAN-10153).
Not currently available
GeoMx® Digital Spatial Profiler
Manuals & Instructions
GeoMx Readout: NGS
Document
Panel Standard and Calibration Sample Usage
MK3415 | July 2021
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Sample Prep
Optimal Thaw/Freeze Cycle Analysis for nCounter Lung Gene Fusion Panel
MK0167
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Sample Prep
GeoMx DSP Instrument User Manual (v3.1 software)
MAN-10152-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Download and Transmit Log Files from GeoMx DSP
MK3840 | Mar 2023
GeoMx® Digital Spatial Profiler
Instrument Operation
Quick Reference Guide
Guideline
Document
nCounter Elements TagSets User Manual
MAN-10086-04 | Oct 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Document
Sample Prep
ROSALIND nCounter Data Analysis Knowledgebase
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Document
NanoString Profiling in Immuno-Oncology
GLSC_PM0057 | Sept 2019
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
nCounter® FAQ Database
GeoMx Academy: NGS Data Analysis Coffee Chat
Sign up for an opportunity to network with other NanoString customers and meet with an instructor to discuss best practices for GeoMx NGS data analysis.
2 hr 0 min
GeoMx Readout: NGS
GeoMx nCounter Readout User Manual
MAN-10089-10 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
GeoMx Readout: nCounter
Document
CosMx™ SMI 101: Introduction to the Technology (July 2023)
This course will introduce you to the CosMx™ Spatial Molecular Imager to provide you with a basic understanding of the technology.
20 min
CosMx™ Spatial Molecular Imager
Course
GeoMx® DSP 101: Introduction to the Technology
This course will introduce you to the GeoMx® Digital Spatial Profiler to provide you with a basic understanding of the technology.
11 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Introductory
Course
Sign Up For Your In-Person Demo In The Customer Experience Lab!
Click here to claim your spot in the next demo hosted by the Customer Experience lab in Seattle or Amsterdam.
CosMx SMI Manual Slide Preparation for RNA Assays
MAN-10184-01-1 | Jan 2024
Manuals & Instructions
CosMx™ Spatial Molecular Imager
Sample Prep
Visit Our New Customer Experience Lab in Amsterdam!
Our lab in Amsterdam is ready to welcome you!
2 min
Demo
GeoMx Digital Spatial Profiler
Brief overview of the platform
2 min
GeoMx® Digital Spatial Profiler
Demo
NanoString's Spatial Organ Atlas
Explore spatial molecular anatomy with GeoMx® DSP technology.
2 min
[separator] CosMx™ SMI
Select your desired Site Readiness Page.
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GeoMx Academy: NGS Workflow for RNA
This course is for users already trained on running GeoMx® DSP for either protein or RNA nCounter readout, who would like to run RNA samples with NGS readout.
2 hr 0 min
GeoMx Readout: NGS
Copy Number Variation (CNV) Assay User Manual
MAN-10093-02 | Dec 2022
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
Quick Guide: GeoMx Fully Automated Slide Preparation: RNA FFPE
MAN-10157-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Quick Reference Guide
Sample Prep
GeoMx DSP Grant Support Package
MK0481 | Mar 2023
GeoMx® Digital Spatial Profiler
Gene Expression Data Analysis Guidelines
MAN-C0011-04
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Document
High Throughput Spatial-Omics Sample Processing Using GeoMx DSP
MK3600 | June 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Sample Prep
Quick Guide: GeoMx Support
MK2430 | May 2020
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
Quick Reference Guide
Guideline
Document
CosMx SMI Instrument Software Release Notes for v1.2
MAN-10176-01
Instrument Operation
CosMx™ Spatial Molecular Imager
Release Notes
CosMx SMI RNA FFPE Assay Bench Notes
MAN-10180-01 | Nov 2023
Quick Reference Guide
CosMx™ Spatial Molecular Imager
Sample Prep
AtoMx Spatial Informatics Platform Security
MK5065 | June 2023
White Papers and Tech Notes
Site Readiness
AtoMx™ Spatial Informatics Platform
Quick Guide: Loading a SPRINT Cartridge
nCounter® SPRINT Profiler
Instrument Operation
Quick Reference Guide
Document
Sample Prep
nSolver Advanced Analysis 2.0 Quick Start Guide
MAN-10074-01
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Quick Reference Guide
GeoMx DSP Operation Guide for Service Providers
MK2689 | Aug 2020
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
CRO/Core Lab Resources
Document
auto-registration
Quick Guide: nCounter MAX/FLEX
GLMX_ST0002
nCounter® Pro/MAX/FLEX
Instrument Operation
Quick Reference Guide
Quick Guide: GeoMx - nCounter Protein Readout
MAN-10103-06 | June 2022
GeoMx® Digital Spatial Profiler
Quick Reference Guide
GeoMx Readout: nCounter
Document
Multi-step Antibody Validation for the GeoMx Digital Spatial Profiler
MK2598 | July 2020
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Document
Sample Prep
CosMx SMI Site Preparation Guide
MAN-10171-05 | Nov 2023
Manuals & Instructions
Site Readiness
CosMx™ Spatial Molecular Imager
nCounter Pro Analysis System User Manual
MAN-10147-04 | Dec 2022
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Instrument Operation
GeoMx DSP Software Release History
PMR-11503-02 | Nov 2023
GeoMx® Digital Spatial Profiler
Instrument Operation
Release Notes
CDF Utility Tool for nCounter Digital Analyzer
nCounter® Pro/MAX/FLEX
Instrument Operation
GeoMx with nCounter Readout - Site Readiness Checklist
FRM-10598-06 | Oct 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
Document
GeoMx DSP Manual Slide Preparation User Manual
MAN-10150-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Morphology Markers
Sample Prep
nCounter Gene Fusion RNA TagSet Hybridization Protocol
MAN-10058-03
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
Quick Guide: GeoMx - nCounter RNA Readout
MAN-10104-05 | June 2022
GeoMx® Digital Spatial Profiler
Quick Reference Guide
GeoMx Readout: nCounter
Document
Applications with Exosomes and Extracellular Vesicles in miRNA Research
MK1207 | Jan 2019
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
miRNA
Sample Prep
Ultra-High-Plex Spatial Proteogenomics of FFPE Tissue Sections
MK4713 | May 2022
GeoMx® Digital Spatial Profiler
Data Analysis
White Papers and Tech Notes
Instrument Operation
GeoMx Readout: NGS
Spatial Proteogenomics
Sample Prep
The Cancer Transcriptome Atlas: Deep Spatial Characterization of the Colorectal Cancer Tumor Microenvironment
MK2414 | May 2020
GeoMx® Digital Spatial Profiler
GeoMx® Cancer Transcriptome Atlas
White Papers and Tech Notes
Document
auto-registration
GeoMx DSP Instrument Software Release Notes for v3.1
PMR-11672
GeoMx® Digital Spatial Profiler
Instrument Operation
Release Notes
nCounter miRNA Expression Assay User Manual
MAN-C0009-08 | July 2022
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
miRNA
Document
Sample Prep
nCounter Low RNA Input Kit User Manual
MAN-10046-05 | Apr 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Low Input
Document
Sample Prep
Selection and Optimization of Custom Probes for GeoMx RNA Assays
MK3582 | Mar 2022
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Sample Prep
Materials List: GeoMx RNA (Semi-Automated) with nCounter Readout
MAN-10126-07 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
CosMx SMI RNA Fresh Frozen Assay Bench Notes
MAN-10182-01 | Nov 2023
Quick Reference Guide
CosMx™ Spatial Molecular Imager
Sample Prep
CosMx SMI Protein Fresh Frozen Assay Bench Notes
MAN-10183-01 | Nov 2023
Quick Reference Guide
CosMx™ Spatial Molecular Imager
Sample Prep
Rosalind - NanoString Quick Start Guide
for nCounter data analysis
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Quick Reference Guide
GeoMx DSP: Creating Geometric Segmentation Masks using ImageJ: Custom Shapes
MK2645-3 | July 2020
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Guideline
Document
CosMx SMI Manual Slide Preparation for Protein Assays
MAN-10185-01-1 | Jan 2024
Manuals & Instructions
CosMx™ Spatial Molecular Imager
Sample Prep
nCounter Gene Expression Panels Overview
MAN-10083-04 | Oct 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Quick Reference Guide
Sample Prep
Integrated and Automated Workflow for High Plex RNA and Protein Profiling
MK1433 | Mar 2019
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Leica BOND RX
Document
Sample Prep
Analyzing FFPE Specimens with the nCounter Copy Number Variation (CNV) Assay
TN_MK1113
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Master List of Equipment, Materials, and Reagents for all GeoMx DSP Workflows
MAN-10166-04 | Nov 2023
GeoMx® Digital Spatial Profiler
CRO/Core Lab Resources
Site Readiness
Checklist
Best Practices for Spatial Profiling for Breast Cancer Research with the GeoMx® Digital Spatial Profiler
Bergholtz H, et al. 2021
GeoMx® Digital Spatial Profiler
CRO/Core Lab Resources
Document
Sample Sectioning Tips and Tricks for CosMx SMI and GeoMx DSP Experiments
MAN-10175-01 | June 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
CosMx™ Spatial Molecular Imager
Sample Prep
GeoMx DSP Fully Automated Slide Preparation for RNA-NGS Assays with BOND RX
This document has been retired. Find the Fully Automated RNA Slide Preparation Protocol in the GeoMx DSP Automated Slide Preparation User Manual (MAN-10151).
Not currently available
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Leica BOND RX
Document
Sample Prep
nCounter MAX/FLEX Analysis System User Manual
MAN-C0035-09 | Apr 2023
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Instrument Operation
Document
GeoMx DSP Spatial Proteogenomic Protocol
MAN-10158-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Guideline
Spatial Proteogenomics
Sample Prep
Materials List: GeoMx RNA (Fully Automated) with nCounter Readout
MAN-10164-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
Setting up Amazon Web Services (AWS) to run the GeoMx NGS Pipeline Software
MAN-10167 | Mar 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
GeoMx Readout: NGS
GeoMx Custom RNA Assays for NGS Readout: Guideline for Use as a Standalone Assay
SEV-00181-01 | This document has been retired. Find the guidance to run standalone custom RNA assays incorporated to the GeoMx DSP Slide Preparation, Instrument, and NGS Readout User Manuals (April 2022).
Not currently available
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
GeoMx Readout: NGS
Guideline
Document
Sample Prep
Nanostring PanCancer IO360 Panel Validation
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
CRO/Core Lab Resources
New Insights into Neuroscience Research
PM0024 | Nov 2017
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
GeoMx DSP IT Specifications and Requirements - At a Glance
MK3689 | July 2023
GeoMx® Digital Spatial Profiler
Instrument Operation
Site Readiness
Document
Quick Guide: GeoMx DSP - nCounter Data Analysis
MAN-10105-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Data Analysis
Quick Reference Guide
GeoMx DSP Instrument Software Release Notes for v3.0
MAN-10107
GeoMx® Digital Spatial Profiler
Instrument Operation
Release Notes
nCounter Gene Signature Assays (PAM50, LST, TIS)
MAN-10188-01 | Jan 2024
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
GeoMx Digital Spatial Profiler (DSP) Project Design Guide
MK3312 | Aug 2021
GeoMx® Digital Spatial Profiler
Data Analysis
White Papers and Tech Notes
Instrument Operation
CRO/Core Lab Resources
Site Readiness
Guideline
Sample Prep
Best Practices for PanCancer IO360 Gene Expresion Panel for FFPE
LBL-10504-03
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
White Papers and Tech Notes
CRO/Core Lab Resources
Sample Prep
Introduction to GeoMx Cancer Transcriptome Atlas: Normalization
MK2833 | Oct 2020
GeoMx® Digital Spatial Profiler
GeoMx® Cancer Transcriptome Atlas
Data Analysis
White Papers and Tech Notes
Document
nCounter Pro Analysis System Enterprise Package
MK4658 | May 2022
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Instrument Operation
nSolver 4.0 Analysis Software User Manual
MAN-C0019-08
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Document
The GeoMx Human Whole Transcriptome Atlas for the Digital Spatial Profiler: Design, Performance, and Experimental Guidelines
MK3209 | Sept 2022
GeoMx® Digital Spatial Profiler
GeoMx Whole Transcriptome Atlas
White Papers and Tech Notes
Document
Quick Guide: GeoMx Semi-Automated Slide Preparation: RNA FFPE
MAN-10131-07 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Quick Reference Guide
Document
Sample Prep
Best Practices for Breast Cancer BC360 Gene Expresion Panel
LBL-10544-02
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
White Papers and Tech Notes
CRO/Core Lab Resources
Sample Prep
Best Practices for Clinical Research Biomarker Studies using the nCounter Platform
MK3415 | June 2021
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
CRO/Core Lab Resources
Sample Prep
CosMx SMI Semi-Automated Slide Preparation for RNA Assays
MAN-10186-01-1 | Jan 2024
Manuals & Instructions
CosMx™ Spatial Molecular Imager
Sample Prep
nCounter microRNA Expression: Data Analysis Guidelines
PMR-11511 | April 2023
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
miRNA
nCounter Reference Genes for Normalization of Expression Data
TN-20090608
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Quick Guide: GeoMx Manual Slide Preparation: Protein FFPE
MAN-10138-06 | Nov 2023
GeoMx® Digital Spatial Profiler
Quick Reference Guide
Document
Sample Prep
GeoMx DSP Library and Sequencing Guide
PMR-11318-02 | Nov 2023
GeoMx® Digital Spatial Profiler
GeoMx Readout: NGS
CRO/Core Lab Resources
Quick Reference Guide
Materials List: GeoMx Protein (Semi-Automated) with nCounter Readout
MAN-10127-08 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
Molecularly Guided Highly Multiplexed Spatial Profiling with the RNAscope and GeoMx Assays
MK1413 | Aug 2019
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
RNAscope
Document
Sample Prep
GeoMx DSP Data Analysis User Manual (v3.1 software)
MAN-10154-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Data Analysis
Manuals & Instructions
nCounter Assays: PBMC Tips and Tricks
MK1193 | Feb 2019
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Sample Prep
CosMx SMI & AtoMx SIP User Manual Archive
Previous versions of user manuals
Data Analysis
Manuals & Instructions
Instrument Operation
Site Readiness
CosMx™ Spatial Molecular Imager
AtoMx™ Spatial Informatics Platform
Sample Prep
All About Fusion Analysis in nSolver & Advanced Analysis
MAN-10076-01
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Quick Reference Guide
Selection and Validation of GeoMx Custom-Labeled Antibodies
MK3600 | Dec 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Document
Sample Prep
Materials List: GeoMx Protein (Manual) with nCounter Readout
MAN-10098-10 | Nov 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
nCounter Gene Expression Profiling from Low Sample Input
MK0167
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Low Input
Sample Prep
miRNA Expression Analysis in Plasma/Serum Samples
MK1342 | Feb 2019
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
miRNA
Document
Sample Prep
Materials List: GeoMx Protein (Semi-Automated) with NGS Readout
MAN-10141-07 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
[separator] GeoMx® DSP
Select your desired Site Readiness Page.
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Site Readiness: Fully Automated GeoMx DSP RNA-NGS Workflow
7 Courses
GeoMx Readout: NGS
Leica BOND RX
RNA
Site Readiness: CosMx™ SMI RNA Manual Workflow
7 Courses
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
7 Courses
GeoMx Readout: NGS
Manual Slide Prep
RNA
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
7 Courses
GeoMx Readout: NGS
Leica BOND RX
RNA
Introducing GeoMx Software v2.3 including Data Analysis Report
Check out the new & improved features of the GeoMx DSP software!
10 min
GeoMx® Digital Spatial Profiler
Basic user
How-To Video
GeoMx DSP Applications in Organoid Research
NanoString scientist LiuLiu Pan, PhD, discusses GeoMx DSP applications for the study of gene expression in organoids.
4 min
GeoMx® Digital Spatial Profiler
Organoid
Gene Expression Panels and Custom CodeSet User Manual
MAN-10056-06 | Aug 2022
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
nCounter CodeSet
Document
Sample Prep
nCounter SPRINT Profiler Hibernation Protocol
MAN-10169-01 | Feb 2023
nCounter® SPRINT Profiler
Manuals & Instructions
Instrument Operation
nCounter MAX/FLEX Cybersecurity FAQ
LBL-10665-01 | Jan 2019
nCounter® Pro/MAX/FLEX
Instrument Operation
Quick Guide: GeoMx Manual Slide Preparation: RNA FFPE
MAN-10130-08 | Nov 2023
GeoMx® Digital Spatial Profiler
Quick Reference Guide
Document
Sample Prep
Quick Guide: GeoMx DSP - NGS Data Analysis
MAN-10134-03 | Nov 2023
GeoMx® Digital Spatial Profiler
Data Analysis
Quick Reference Guide
GeoMx with NGS Readout - Site Readiness Checklist
FRM-10768-05 | Oct 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
Document
[separator] GeoMx® DSP Training Videos
Select the appropriate step in the GeoMx® DSP workflow to start learning!
separator
Introduction to the GeoMx Digital Spatial Profiler: Morphology-Driven Spatial Genomics and Proteomics
Wes Goldman, Senior Technical Sales Specialist
30 min
GeoMx® Digital Spatial Profiler
GeoMx Whole Transcriptome Atlas
GeoMx® Cancer Transcriptome Atlas
Introductory
Course
How to enroll in a NanoU live course
Follow these simple steps to register for and access your live course!
Guideline
Document
Introducing the GeoMx Whole Transcriptome Atlas
Enjoy this musical introduction to the 18,000+ plex GeoMx assay!
2 min
GeoMx® Digital Spatial Profiler
GeoMx Whole Transcriptome Atlas
[separator] nCounter® Training Videos
Select the appropriate step in the nCounter® workflow to start learning!
separator
[separator] CosMx™ SMI Training Videos
Select the appropriate step in the CosMx™ SMI workflow to start learning!
separator
Multiplexed Cancer Immune Response Analysis: nCounter PanCancer Immune Profiling Panel
MK1188 | May 2019
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Sample Prep
CosMx SMI Instrument User Manual (software v1.2)
MAN-10161-03-2 | Software v1.2 | Jan 2024
Manuals & Instructions
Instrument Operation
CosMx™ Spatial Molecular Imager
Unlocking Predictive Potential for Response to Immunotherapy
MK1351 | Mar 2019
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Document
GeoMx DSP Data Analysis Auxiliary Server - Tech Specs and User Guidelines
PMR-11229-03 | Mar 2023
GeoMx® Digital Spatial Profiler
Data Analysis
Manuals & Instructions
Instrument Operation
Basic user
Guideline
GeoMx DSP User Manual Archive
Previous versions of instrument and workflow manuals
GeoMx® Digital Spatial Profiler
Data Analysis
Manuals & Instructions
Instrument Operation
GeoMx Readout: NGS
Basic user
Advanced user
GeoMx Readout: nCounter
Document
Sample Prep
Quick Guide: GeoMx DSP Instrument
MAN-10132-05 | Nov 2023
GeoMx® Digital Spatial Profiler
Instrument Operation
Quick Reference Guide
Materials List: GeoMx Protein (Manual) with NGS Readout
MAN-10140-07 | Nov 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
Materials List: GeoMx RNA (Semi-Automated) with NGS Readout
MAN-10129-08 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
Preparing RNA for nCounter Assays (FFPE or Fresh Frozen Samples)
MAN-10050-06 | Sept 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
nCounter miRGE Assay User Manual
MAN-C0017-02
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
miRNA
Sample Prep
Combined Workflow of GeoMx Cancer Transcriptome Atlas and RNAscope Assays
MK2495 | May 2020
GeoMx® Digital Spatial Profiler
GeoMx Whole Transcriptome Atlas
White Papers and Tech Notes
RNAscope
Document
Sample Prep
GeoMx DSP Morphology Marker Datasheets
May 2022
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
CRO/Core Lab Resources
Guideline
Morphology Markers
Sample Prep
PlexSet Reagents User Manual
MAN-10040-08 | Oct 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
PlexSet
Document
Sample Prep
Spatial Profiling of COVID-19 Samples: Experimental Designs to Capture Regional Heterogeneity with the GeoMx DSP
MK2794 | Sept 2020
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
COVID-19
Document
CosMx SMI Semi-Automated Slide Preparation for Protein Assays
MAN-10187-01-1 | Jan 2024
Manuals & Instructions
CosMx™ Spatial Molecular Imager
Sample Prep
GeoMx DSP NGS Readout User Manual
MAN-10153-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
GeoMx Readout: NGS
nCounter SPRINT Profiler User Manual
MAN-10017-10 | Apr 2022
nCounter® SPRINT Profiler
Manuals & Instructions
Instrument Operation
Document
GeoMx NGS Pipeline Software v3.1 Release Notes
PMR-11678-01
GeoMx® Digital Spatial Profiler
GeoMx Readout: NGS
Release Notes
Quick Guide: GeoMx DSP NGS Readout
MAN-10133-05 | Mar 2023
GeoMx® Digital Spatial Profiler
GeoMx Readout: NGS
Quick Reference Guide
How to Clean Your GeoMx DSP Slide Holder
MAN-10149-01 | Apr 2022
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Guideline
AtoMx SIP User Manual (software v1.2)
MAN-10170-04 | Aug 2023
Data Analysis
Manuals & Instructions
AtoMx™ Spatial Informatics Platform
Materials List: GeoMx RNA (Fully Automated) with NGS Readout
MAN-10165-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Site Readiness
Checklist
nCounter Data Analysis Resource Guide
PMR-11357-01 | Sept 2022
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
CRO/Core Lab Resources
Quick Reference Guide
AtoMx SIP, Image Viewer, and CosMx SMI Data Analysis Release Notes for v1.2
PMR-11369-03
Instrument Operation
CosMx™ Spatial Molecular Imager
AtoMx™ Spatial Informatics Platform
Release Notes
Morphology Marker Guidelines
GLSC_PM0057 | Mar 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Basic user
RNAscope
CRO/Core Lab Resources
Guideline
Document
Morphology Markers
Sample Prep
High-resolution, high-throughput spatial transcriptomics of complex tissues
M-GL-00130 v1.0
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
GeoMx Readout: NGS
Document
CosMx SMI Protein FFPE Assay Bench Notes
MAN-10181-01 | Nov 2023
Quick Reference Guide
CosMx™ Spatial Molecular Imager
Sample Prep
[separator] Learn How Your Peers are Using NanoString’s Platforms!
Watch the featured webinars below to see how your peers are using NanoString in their work!
separator
Dr. Alexandre Hirayama, MD: Understanding the Efficacy of CAR-T Cell Therapy for LBCL
Learn how the nCounter® Analysis System was used to study how the tumor microenvironment impacts outcomes of CD19 CAR-T cell therapy for patients with large B-cell lymphoma.
Webinar
Basic user
nCounter Analysis System
Welcome!
Are you new to NanoU? Check out this short video as Allison Songstad, NanoU's manager, shows you her favorite courses and features in NanoU!
3 min
Introductory
Dr. Chen Zhao, MD: Interrogating Tumor-Immune Interactions in AML Patients Receiving Immune Checkpoint Inhibitors
Learn how the GeoMx® DSP was used to study the tumor-immune microenvironment in acute myeloid leukemia.
GeoMx® Digital Spatial Profiler
Webinar
Basic user
Christopher E. Mason, PhD: Spatial and Multi-Omic Profiling of Skin and Blood During Human Spaceflight
Hear how the GeoMx® DSP was used to better understand what happens in the human body during spaceflight.
GeoMx® Digital Spatial Profiler
Webinar
Basic user
[separator] Getting Started: Introductory Courses
New to NanoString? Check out the courses below to start learning about NanoString's platforms!
separator
[separator] Resources to Troubleshoot
These resources show how to troubleshoot with the NanoString Technical Support Team.
separator
NanoString Webinars
Check out recorded content showcasing the NanoString technology!
GeoMx® Digital Spatial Profiler
Webinar
GeoMx Whole Transcriptome Atlas
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
[separator] Resources to Run the Instrument
These resources cover important information to set your instrument run up for success!
separator
Best Practices for Region of Interest Segmentation
This intermediate level course is for GeoMx® DSP users that are familiar with region of interest (ROI) selection and want to learn how to perform segmentation.
26 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Course
Segmentation
Introduction to Region of Interest Selection
This introductory level course is for new GeoMx® DSP users that want to learn more about ROI selection.
30 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Introductory
Course
Region of Interest
CX Lab Experience: An Overview of the GeoMx DSP Workflow
Highlights of the GeoMx workflow with NGS Readout, from the NanoString Customer Experience Lab in Seattle
16 min
GeoMx® Digital Spatial Profiler
Demo
Data Analysis
Instrument Operation
Introductory
Sample Prep
William L. Hwang, MD, PhD: Precision Oncology in Pancreatic Cancer through Single-Cell and Spatial Omics
See how the GeoMx® DSP was used to study pancreatic ductal adenocarcinoma.
GeoMx® Digital Spatial Profiler
Webinar
Advanced user
GeoMx DSP Best Practices and Troubleshooting
Excerpt from GeoMx DSP Instrument User Manual
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Troubleshoot
Pharma and CRO Spatial Summit Series
Learn how 6 of our Pharma and Contract Research Organizations (CROs) customers are designing and executing GeoMx® DSP experiments for clinical studies.
153 min
GeoMx® Digital Spatial Profiler
Webinar
Basic user
nCounter® MAX/FLEX/Pro CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter® MAX/FLEX/Pro run.
9 min
nCounter® Pro/MAX/FLEX
nCounter CodeSet
Basic user
How-To Video
Sample Prep
Downloading Data from the nCounter® MAX/FLEX/Pro Digital Analyzer
Watch this video to learn more about how to download your data from the nCounter® MAX/FLEX/Pro.
6 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
Setting Up the nCounter® MAX/FLEX/Pro Prep Station
Check out this video to see how to setup the nCounter® MAX/FLEX/Pro Prep Station.
17 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
Setting Up the nCounter® MAX/FLEX/Pro Digital Analyzer
Check out this video to see how to run the nCounter® MAX/FLEX/Pro Digital Analyzer.
10 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
nCounter® Analysis System (MAX/FLEX/Pro) - CodeSet Chemistry
This course will walk you through the steps for prepping your CodeSet and running it on your nCounter® Analysis System(MAX/FLEX/Pro). You will receive a certificate when you successfully complete this course. Let's get started!
66 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
Course
Sample Prep
Master Kit Consumables
Watch this video to see what is included in the nCounter® MAX/FLEX/Pro Master Kit!
7 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
nCounter® MAX/FLEX/Pro File Definitions
Watch this video to learn more about the files needed to run the nCounter® MAX/FLEX/Pro.
17 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
New Features of GeoMx Software v2.5 including Data Analysis Workflows
Check out the new & improved features of the GeoMx DSP software!
7 min
GeoMx® Digital Spatial Profiler
Data Analysis
Instrument Operation
GeoMx Readout: NGS
Basic user
How-To Video
GeoMx® Academy: NGS Data Analysis for RNA
Watch this course for a deep dive into GeoMx® Data Analysis for the NGS Assay
98 min
GeoMx® Digital Spatial Profiler
Data Analysis
GeoMx Readout: NGS
Basic user
Course
GeoMx® DSP: Data Analysis for NGS Readout
This course covers GeoMx® DSP data analysis for RNA-NGS readout.
60 min
GeoMx® Digital Spatial Profiler
Data Analysis
GeoMx Readout: NGS
Basic user
Course
How to create a GeoMx® Data Analysis Report
Useful tool for CROs and Service Providers
6 min
GeoMx® Digital Spatial Profiler
Data Analysis
GeoMx Readout: NGS
Basic user
CRO/Core Lab Resources
How-To Video
[separator] Data Analysis Overview Courses
Below are interactive courses to help you understand GeoMx® DSP data analysis.
separator
How to Run GeoMx® DSP Data Analysis Workflows
A new feature of GeoMx software v2.5
4 min
GeoMx® Digital Spatial Profiler
Data Analysis
GeoMx Readout: NGS
Basic user
How-To Video
GeoMx® Data Analysis for nCounter Readout
Overview and Software Demonstration
91 min
GeoMx® Digital Spatial Profiler
Data Analysis
Basic user
GeoMx Readout: nCounter
Course
Normalization of GeoMx DSP Protein Data using a Custom Script
This course covers best practices in GeoMx DSP protein data normalization, using the custom script feature of the data analysis software.
16 min
GeoMx® Digital Spatial Profiler
Data Analysis
Advanced user
GeoMx Readout: nCounter
Course
How to use the Spatial Decon Custom Script
Cell type deconvolution tool for GeoMx® DSP
6 min
GeoMx® Digital Spatial Profiler
GeoMx Whole Transcriptome Atlas
GeoMx® Cancer Transcriptome Atlas
Data Analysis
Instrument Operation
GeoMx Readout: NGS
Advanced user
How-To Video
GeoMx® DSP: How to Analyze Data from the TCR Profiling Add-on Assay
Watch this short video to see how to analyze your data using this add-on assay!
7 min
How to overlay images in the GeoMx DSP scan workspace
Import and overlay images in the ROI selection step of the GeoMx DSP workflow.
4 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
How-To Video
How to Exchange Data between GeoMx DSP Instruments
Tutorial to export and import data from the GeoMx DSP.
4 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
How-To Video
New Features of GeoMx® DSP Software v3.0 including Scan Only Mode
Check out the new and improved features of the GeoMx® DSP software!
GeoMx® Digital Spatial Profiler
Instrument Operation
[separator] How-to Videos
separator
Advanced Segmentation Using ImageJ
This advanced level course is for GeoMx® DSP users that are familiar with region of interest (ROI) segmentation and want to learn how to use ImageJ to customize segmentation masks.
25 min
Region of Interest Selection Course Series
These courses will teach you about ROI selection, starting with the basics and then exploring advanced techniques.
4 Courses
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
Learning Path
Region of Interest
How to perform cell-type contouring using ImageJ
Strategy for ROI selection on GeoMx® DSP
2 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Advanced user
How-To Video
[separator] Overview Courses
Below are interactive courses to help you understand how the nCounter® MAX/FLEX/Pro systems work.
separator
Using the nCounter® SPRINT Control Center
Watch this video to learn how to use the nCounter® SPRINT Control Center.
8 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
Downloading Data from the nCounter® SPRINT
Check out this video to learn how to download your data from the nCounter® SPRINT.
5 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter® SPRINT run.
9 min
nCounter® SPRINT Profiler
nCounter CodeSet
Basic user
How-To Video
Sample Prep
nCounter® SPRINT Profiler - CodeSet Chemistry
This course will walk you through the steps for prepping your CodeSet and running it on your nCounter® SPRINT Profiler system. You will receive a certificate when you successfully complete this course. Let's get started!
59 min
nCounter® SPRINT Profiler
Basic user
Course
Sample Prep
nCounter® SPRINT File Definitions
Watch this video to learn more about the files needed to run the nCounter® SPRINT.
7 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
Initiating a Run on the nCounter® SPRINT
Watch this video to learn how to start your run on the nCounter® SPRINT.
8 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nSolver 201: Advanced Analysis
Learn how to take your nSolver analysis to the next level!
48 min
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Advanced user
Course
nSolver 101: Basic Analysis
Sign up for this course to learn the basics of nSolver data analysis.
1 hr 8 min
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Introductory
Course
Using ROSALIND® to Analyze nCounter® Data
Sign up for this course to learn how to analyze your data using the ROSALIND® cloud-based software!
1 hr 34 min
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
nCounter Analysis System
nCounter® MAX/FLEX/Pro Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter® MAX/FLEX/Pro.
5 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
Troubleshoot
How-To Video
How to Run Samples on the nCounter® Analysis Systems (MAX/FLEX/Pro)
This learning path will show you the steps for prepping your CodeSet and processing your samples on the nCounter® Analysis System. Let's dive in!
8 Courses
nCounter® MAX/FLEX/Pro Maintenance: Conditioning the O-Rings
Watch this video to learn more about nCounter® MAX/FLEX/Pro maintenance.
7 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
GeoMx® DSP Fully Automated Workflow with Leica
This course will walk you through the GeoMx® DSP fully automated workflow with Leica and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
24 min
Leica BOND RX
CRO/Core Lab Resources
GeoMx™ DSP Configuration Files
Please select the configuration files, such as .PKC and .MKC, on this page that match the name and lot number of the GeoMx Assays used.
How to Clean your GeoMx DSP Slide Holder
Keep your instrument slide holder in great shape with these tips.
2 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
How-To Video
[separator] Sample Preparation Courses
Below are interactive courses to help get you started with GeoMx® DSP sample preparation.
separator
GeoMx DSP Core Lab Starter Kit
Resources to help you launch your GeoMx Core Lab
1 hr 45 min
GeoMx® Digital Spatial Profiler
Data Analysis
Instrument Operation
Introductory
CRO/Core Lab Resources
Course
Sample Prep
GeoMx DSP Experimental Design & Case Studies
This seminar discusses strategies in spatial biology experiments.
31 min
GeoMx® Digital Spatial Profiler
Webinar
Data Analysis
Basic user
Course
Experimental Design
Sample Prep
How To Use Morphology Markers with the GeoMx® DSP
This course will cover how to select and optimize your morphology markers before running experiments on the GeoMx® DSP.
21 min
GeoMx® Digital Spatial Profiler
Basic user
Morphology Markers
Course
Sample Prep
Immuno-Oncology Proteome Atlas (IPA)
Click here to learn more about the IO Proteome Atlas for the GeoMx® DSP!
10 min
How to Change Reagents on the GeoMx DSP
This tutorial shows how to change the buffers or reagents in the GeoMx DSP.
4 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
How-To Video
[separator] Basic Overview Courses
Below are interactive courses designed to provide a basic understanding of the GeoMx® DSP system.
separator
GeoMx® DSP: Using Scan Only Mode
Watch this video to learn about a new feature of software v3.0!
4 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Protein-NGS Workflow with Manual Slide Preparation
This course will walk you through the GeoMx® DSP protein workflow with manual slide prep and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
18 min
GeoMx® Digital Spatial Profiler
Data Analysis
Instrument Operation
Introductory
Course
Sample Prep
How to connect to GeoMx Support using LogMeIn Rescue
This tutorial shows how to establish a connection with NanoString's GeoMx Support team using the secure LogMeIn application.
3 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Basic user
How-To Video
[separator] New Features!
Check out new features for the GeoMx® DSP software.
separator
GeoMx™ DSP Calibration Files
GeoMx DSP calibration files are required to calibrate data for each lot of GeoMx HybCode. Please select the file on this page that matches the lot of GeoMx HybCode currently in use.
GeoMx® Digital Spatial Profiler
Semi-Automated Protein-NGS Workflow with Leica Biosystems
This course will walk you through the GeoMx® DSP semi-automated protein workflow with Leica and NGS readout. We will go over the fundamentals of the workflow to give you a basic understanding of the process.
19 min
GeoMx® Digital Spatial Profiler
Data Analysis
Instrument Operation
Introductory
Course
Sample Prep
[separator] GeoMx® DSP Overview Courses
Below are interactive courses to help you understand how the GeoMx® DSP system work.
separator
GeoMx DSP IHC Workflow and Custom Morphology Markers: Troubleshooting, Tips and Tricks
MAN-10172-01 | Dec 2022
GeoMx® Digital Spatial Profiler
Manuals & Instructions
CRO/Core Lab Resources
Morphology Markers
Sample Prep
nCounter Gene Fusion Panels Overview
MAN-10085-02 | Oct 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
nCounter Best Practices: How to Make a Synthetic Calibration Sample
MK4708
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
White Papers and Tech Notes
Sample Prep
Preparing Cell Lysates for nCounter Assays (Lyse and Go Protocol)
MAN-10051-06 | Sept 2023
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
Methods to Verify GeoMx DSP Morphology Markers
PMR-11593-01 | Sept 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Morphology Markers
Sample Prep
GeoMx DSP Protein Barcoding Kit User Manual
MAN-10156-04 | Dec 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Sample Prep
nCounter Pro Analysis System Cybersecurity FAQ
LBL-11118-03 | Oct 2022
nCounter® Pro/MAX/FLEX
Instrument Operation
How to Send MAX/FLEX Log Files
MK0673
nCounter® Pro/MAX/FLEX
Instrument Operation
Quick Reference Guide
nCounter Analysis System (MAX/FLEX or Pro) Site Requirements Checklist
FRM-M0265-04 | Aug 2022
nCounter® Pro/MAX/FLEX
Site Readiness
Checklist
Configure and Install SSL Certificates for GeoMx DSP
MAN-10168-02 | Mar 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Quick Guide: nSolver 4.0
MAN-10049-01
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Quick Reference Guide
GeoMx DSP Data Analysis Resource Guide
PMR-11294-02 | Mar 2023
GeoMx® Digital Spatial Profiler
Data Analysis
CRO/Core Lab Resources
Quick Reference Guide
Guidelines for PlexSet Data Analysis in nSolver Software
MAN-10044-03 | Mar 2023
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
PlexSet
Document
GeoMx DSP: Creating Geometric Segmentation Masks using ImageJ: Contouring
MK2645-2 | Mar 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Instrument Operation
Guideline
Document
nCounter RUO PAM50 CodeSet User Manual (MAN-10125)
This document has been retired. Please refer to the nCounter Gene Signature Assays User Manual (MAN-10188).
Not currently available
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
nCounter Data Analysis Guidelines for Copy Number Variation (CNV)
MAN-C0014-02
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Advanced Analysis 2.0 User Manual
MAN-10030-03
Data Analysis
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Document
GeoMx DSP Morphology Marker Reference List
Oct 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
CRO/Core Lab Resources
Guideline
Morphology Markers
Sample Prep
Quick Guide: Downloading SPRINT Log Files
MK0673 | Mar 2018
nCounter® SPRINT Profiler
Instrument Operation
Troubleshoot
Quick Reference Guide
Document
GeoMx DSP Automated Slide Preparation User Manual
MAN-10151-04 | Nov 2023
GeoMx® Digital Spatial Profiler
Manuals & Instructions
Leica BOND RX
Morphology Markers
Sample Prep
GeoMx NGS Pipeline on Illumina DRAGEN User Manual
RPP-00535-02 | This document has been replaced by the GeoMx NGS Readout User Manual (MAN-10153).
Not currently available
GeoMx® Digital Spatial Profiler
Manuals & Instructions
GeoMx Readout: NGS
Document
GeoMx DSP IT Specifications and Requirements - In Depth
MK3838 | Oct 2023
GeoMx® Digital Spatial Profiler
White Papers and Tech Notes
Site Readiness
Materials List: GeoMx RNA (Manual) with NGS Readout
MAN-10128-08 | Nov 2023
GeoMx® Digital Spatial Profiler
Site Readiness
Checklist
nCounter RUO Lymphoma Subtyping Test (LST) User Manual (MAN-10142)
This document has been retired. Please refer to the nCounter Gene Signature Assays User Manual (MAN-10188).
Not currently available
nCounter® SPRINT Profiler
nCounter® Pro/MAX/FLEX
Manuals & Instructions
Sample Prep
Introduction to GeoMx Normalization: Protein
MK2593 | July 2020
GeoMx® Digital Spatial Profiler
Data Analysis
White Papers and Tech Notes
Document
CosMx SMI Data Export Guide
MAN-10179-02 | Nov 2023
Data Analysis
Manuals & Instructions
CosMx™ Spatial Molecular Imager
AtoMx™ Spatial Informatics Platform
CosMx SMI Data Analysis User Manual (software v1.2)
MAN-10162-03 | Aug 2023
Data Analysis
Manuals & Instructions
CosMx™ Spatial Molecular Imager
CosMx™ SMI: How-to Assemble a Flow Cell (July 2023)
This short course will show you how to use the Flow Cell Assembly Tool.
6 min
CosMx™ Spatial Molecular Imager
Course
CosMx™ SMI: How-to Apply an Incubation Frame (July 2023)
This short course will show you how to use the incubation frames in the CosMx™ Spatial Molecular Imager sample preparation workflow.
5 min
CosMx™ Spatial Molecular Imager
Course
CosMx™ SMI: How to Load a Flow Cell into the Instrument (July 2023)
This short course will show you how to load assembled flow cells into the CosMx™ Spatial Molecular Imager.
5 min
CosMx™ Spatial Molecular Imager
Course
CosMx™ SMI: Networking Basics (July 2023)
This course is intended for IT professionals and will cover the requirements to network the CosMx™ SMI instrument.
10 min
CosMx™ Spatial Molecular Imager
Course
Quick Guide: GeoMx Semi-Automated Slide Preparation: Protein FFPE
MAN-10139-06 | Nov 2023
GeoMx® Digital Spatial Profiler
Leica BOND RX
Quick Reference Guide
Document
Sample Prep
Step 3: Required Equipment, Materials, and Reagents for the Semi-Automated RNA-NGS Workflow
Leica BOND RX
RNA
Step 4: NanoString GeoMx® DSP Training Kit for the Semi-Automated RNA-NGS Workflow
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 5: Pre-Training Preparation for the Semi-Automated RNA-NGS Workflow
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Semi-Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP RNA-NGS Training Kit
Step 5: Pre-Training Preparation
Step 3: Required Equipment, Materials, and Reagents for the RNA-NGS Manual Workflow
Step 6: Training Coursework
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 6: Training Coursework for the Fully Automated RNA-NGS Workflow
Step 3: Required Equipment, Materials, and Reagents for the Fully Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP Training Kit for the Fully Automated RNA-NGS Workflow
Step 5: Pre-Training Preparation for the Fully Automated RNA-NGS Workflow
Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: CosMx™ SMI Pre-Training Preparation
This step discusses the instructions for pre-training preparation to ensure everything is setup prior to your training.
Step 5: CosMx™ SMI Training Coursework
This section includes the coursework you will need to complete before your training.
Step 1: CosMx™ SMI Site Preparation Guide
Start here to review the Site Preparation Guide to prepare your lab space for your training.
Site Readiness: CosMx™ SMI RNA-Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Notice
Step 2: Required Equipment, Materials, and Reagents
This section covers the required equipment, materials, and reagents for your training.
Step 3: NanoString CosMx™ SMI Training Kit
This step goes over what is included in the NanoString CosMx™ SMI Training Kit.
Introduction to the SPRINT Profiler
Watch this short video to begin learning about the nCounter® SPRINT Profiler!
Best Practices for Region of Interest Segmentation
This intermediate level course is for GeoMx® DSP users that are familiar with region of interest (ROI) selection and want to learn how to perform segmentation.
26 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Course
Segmentation
How To Use Morphology Markers with the GeoMx® DSP
This course will cover how to select and optimize your morphology markers before running experiments on the GeoMx® DSP.
21 min
GeoMx® Digital Spatial Profiler
Basic user
Morphology Markers
Course
Sample Prep
Introduction to Region of Interest Selection
This introductory level course is for new GeoMx® DSP users that want to learn more about ROI selection.
30 min
GeoMx® Digital Spatial Profiler
Instrument Operation
Introductory
Course
Region of Interest
Advanced Segmentation Using ImageJ
This advanced level course is for GeoMx® DSP users that are familiar with region of interest (ROI) segmentation and want to learn how to use ImageJ to customize segmentation masks.
25 min
Step 3: Required Equipment, Materials, and Reagents for the Semi-Automated RNA-NGS Workflow
Leica BOND RX
RNA
Step 4: NanoString GeoMx® DSP Training Kit for the Semi-Automated RNA-NGS Workflow
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 5: Pre-Training Preparation for the Semi-Automated RNA-NGS Workflow
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Semi-Automated RNA-NGS Workflow
Master Kit Consumables
Watch this video to see what is included in the nCounter® MAX/FLEX/Pro Master Kit!
7 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
Downloading Data from the nCounter® MAX/FLEX/Pro Digital Analyzer
Watch this video to learn more about how to download your data from the nCounter® MAX/FLEX/Pro.
6 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
nCounter® MAX/FLEX/Pro CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter® MAX/FLEX/Pro run.
9 min
nCounter® Pro/MAX/FLEX
nCounter CodeSet
Basic user
How-To Video
Sample Prep
nCounter® MAX/FLEX/Pro Maintenance: Conditioning the O-Rings
Watch this video to learn more about nCounter® MAX/FLEX/Pro maintenance.
7 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
nCounter® MAX/FLEX/Pro File Definitions
Watch this video to learn more about the files needed to run the nCounter® MAX/FLEX/Pro.
17 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
Setting Up the nCounter® MAX/FLEX/Pro Digital Analyzer
Check out this video to see how to run the nCounter® MAX/FLEX/Pro Digital Analyzer.
10 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
nCounter® MAX/FLEX/Pro Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter® MAX/FLEX/Pro.
5 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
Troubleshoot
How-To Video
Setting Up the nCounter® MAX/FLEX/Pro Prep Station
Check out this video to see how to setup the nCounter® MAX/FLEX/Pro Prep Station.
17 min
nCounter® Pro/MAX/FLEX
Instrument Operation
Basic user
How-To Video
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 2: IT Requirements and Specifications
Step 4: NanoString GeoMx® DSP RNA-NGS Training Kit
Step 5: Pre-Training Preparation
Step 3: Required Equipment, Materials, and Reagents for the RNA-NGS Manual Workflow
Step 6: Training Coursework
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Fully Automated RNA-NGS Workflow
Step 3: Required Equipment, Materials, and Reagents for the Fully Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP Training Kit for the Fully Automated RNA-NGS Workflow
Step 5: Pre-Training Preparation for the Fully Automated RNA-NGS Workflow
Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: CosMx™ SMI Pre-Training Preparation
This step discusses the instructions for pre-training preparation to ensure everything is setup prior to your training.
Step 5: CosMx™ SMI Training Coursework
This section includes the coursework you will need to complete before your training.
Step 1: CosMx™ SMI Site Preparation Guide
Start here to review the Site Preparation Guide to prepare your lab space for your training.
Site Readiness: CosMx™ SMI RNA-Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Notice
Step 2: Required Equipment, Materials, and Reagents
This section covers the required equipment, materials, and reagents for your training.
Step 3: NanoString CosMx™ SMI Training Kit
This step goes over what is included in the NanoString CosMx™ SMI Training Kit.
Downloading Data from the nCounter® SPRINT
Check out this video to learn how to download your data from the nCounter® SPRINT.
5 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT Maintenance: Changing Buffers
Watch this video to learn how to change buffers on the nCounter® SPRINT.
13 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT File Definitions
Watch this video to learn more about the files needed to run the nCounter® SPRINT.
7 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT Troubleshooting: Downloading Log Files
Watch this video to learn how to download log files from the nCounter® SPRINT.
7 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
Troubleshoot
How-To Video
Loading Samples Into The nCounter® SPRINT Cartridge
This short course will show you how to load your samples into a nCounter® SPRINT cartridge.
9 min
nCounter® SPRINT Profiler
Basic user
How-To Video
Sample Prep
Initiating a Run on the nCounter® SPRINT
Watch this video to learn how to start your run on the nCounter® SPRINT.
8 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
nCounter® SPRINT CodeSet Hybridization Setup
Check out this video to see how to setup the CodeSet hybridization for your nCounter® SPRINT run.
9 min
nCounter® SPRINT Profiler
nCounter CodeSet
Basic user
How-To Video
Sample Prep
Using the nCounter® SPRINT Control Center
Watch this video to learn how to use the nCounter® SPRINT Control Center.
8 min
nCounter® SPRINT Profiler
Instrument Operation
Basic user
How-To Video
Introduction to the SPRINT Profiler
Watch this short video to begin learning about the nCounter® SPRINT Profiler!
Step 3: Required Equipment, Materials, and Reagents for the Semi-Automated RNA-NGS Workflow
Leica BOND RX
RNA
Step 4: NanoString GeoMx® DSP Training Kit for the Semi-Automated RNA-NGS Workflow
Site Readiness: Semi-Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 1: Checklist for GeoMx® DSP Instrument Delivery and Installation
Step 5: Pre-Training Preparation for the Semi-Automated RNA-NGS Workflow
Step 2: IT Requirements and Specifications
Step 6: Training Coursework for the Semi-Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP RNA-NGS Training Kit
Step 5: Pre-Training Preparation
Step 3: Required Equipment, Materials, and Reagents for the RNA-NGS Manual Workflow
Step 6: Training Coursework
Site Readiness: GeoMx® DSP RNA-NGS Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 6: Training Coursework for the Fully Automated RNA-NGS Workflow
Step 3: Required Equipment, Materials, and Reagents for the Fully Automated RNA-NGS Workflow
Step 4: NanoString GeoMx® DSP Training Kit for the Fully Automated RNA-NGS Workflow
Step 5: Pre-Training Preparation for the Fully Automated RNA-NGS Workflow
Site Readiness: Fully Automated GeoMx® DSP RNA-NGS Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Step 4: CosMx™ SMI Pre-Training Preparation
This step discusses the instructions for pre-training preparation to ensure everything is setup prior to your training.
Step 5: CosMx™ SMI Training Coursework
This section includes the coursework you will need to complete before your training.
Step 1: CosMx™ SMI Site Preparation Guide
Start here to review the Site Preparation Guide to prepare your lab space for your training.
Site Readiness: CosMx™ SMI RNA-Manual Workflow
Congratulations! Click "Open" to complete your site readiness and receive your certificate.
Notice
Step 2: Required Equipment, Materials, and Reagents
This section covers the required equipment, materials, and reagents for your training.
Step 3: NanoString CosMx™ SMI Training Kit
This step goes over what is included in the NanoString CosMx™ SMI Training Kit.
Introduction to the SPRINT Profiler
Watch this short video to begin learning about the nCounter® SPRINT Profiler!